6/17/2023 0 Comments Download cytoscape 2.8.3![]() This made it possible to assign a UNIQUE systematic name to all genes, and to avoid the confusing situation of having genes sharing a name.Ĭhromosome nomenclature. When the Yeast genome was first sequenced (as the very first eukaryotic genome) in the mid 1990's, every single ORF (Open Reading Frame - all potential genes) was given a name. The naming of the Saccharomyces cerevisiae genes follows a strict nomenclature, with a combination of a "popular" and a systematic name. The Saccharomyces Genome Database (SGD):.However, for Yeast there exists an even more dedicated database that has a 100% focus on Yeast: UniProt is generally speaking one of the most reliable and well annotated databases out there. We have previously been working with UniProt based data for the introduction to Cytoscape exercise. To learn how to work with LARGE SCALE general-purpose PPI (protein-protein interaction) data in Cytoscape.ĭata and databases Yeast genes and the Saccharomyces Genome Database.How to gather additional gene/protein meta-data.Naming scheme for yeast genes/proteins.To learn how to work with systematic annotated Yeast data. ![]() 4.3 Investigating the "big circle" clusterĮxercise: Yeast Cell Cycle 1 - introduction.4.2 Creating new (sub) networks in Cytoscape.4 Identifying functional modules in the network.3.4 Creating a Base Session for the Yeast exercises.3 Working with "large-scale" datasets in Cytoscape.2.1 Yeast genes and the Saccharomyces Genome Database.1 Exercise: Yeast Cell Cycle 1 - introduction.
0 Comments
Leave a Reply. |